Software

• 3D-DOCK Predictive protein-protein docking. (No longer supported!)
• • FTDOCK performs rigid-body docking on two biomolecules in order to predict their correct binding geometry based on surface shape complementarity and electrostatic interactions.
  • RPSCORE reranks candidate docking orientations produced by FTDOCK using an empirical scoring function derived from a library of protein-protein interfaces.
  • MULTIDOCK provides a method for refining the interface between two proteins at the atomic level given an initial docked complex (such as one generated by FTDOCK).
• POPULUS Genetic algorithm for protein refinement.